Movi indexes
Movi (GitHub repo) is an efficient and scalable approach for indexing and querying pangenomes. It uses the move structure of Nishimoto and Tabei as its core, cache-efficient index structure.
Indexes below are compatible with Movi 2. They include threshold information and are intended for use with Movi’s default regular-thresholds mode.
The following table lists each complete .tar.gz archive, then the individual component files contained in that archive.
| Index / file | Size | HTTPS |
|---|---|---|
HPRC Release 2, 466 human haplotypes (complete .tar.gz) |
25.8 GB | .tar.gz |
| Link above is recommended; links below are its individual components | ||
build.log |
3.4 KB | .log |
index.movi |
48.4 GB | .movi |
movi.pml.nulldb |
1.1 MB | .pml.nulldb |
movi.zml.nulldb |
1.1 MB | .zml.nulldb |
null_reads.fasta |
157 KB | .fasta |
ref.list |
17 KB | .list |
HPRC Release 1, 96 human haplotypes (complete .tar.gz) |
18.8 GB | .tar.gz |
| Link above is recommended; links below are its individual components | ||
CMakeLists.txt |
3.2 KB | .txt |
build.log |
10.1 KB | .log |
index.html |
141 B | .html |
index.movi |
37.7 GB | .movi |
movi.pml.nulldb |
1.1 MB | .pml.nulldb |
movi.zml.nulldb |
1.1 MB | .zml.nulldb |
null_reads.fasta |
157 KB | .fasta |
reference_names |
1.2 KB | reference_names |
Corresponding S3 URLs can be obtained by replacing the https://genome-idx.s3.amazonaws.com/ prefix with s3://genome-idx/.
Movi is the work of Mohsen Zakeri, Nathaniel Brown, Travis Gagie and Ben Langmead.