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HTTPS and S3 links to genomic index files freely available in the AWS cloud

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Centrifuge

Centrifuge indexes

Centrifuge is a very rapid and memory-efficient system for the classification of DNA sequences from microbial samples.

Collection Date Size HTTPS URL S3 URL
Refseq: bacteria, archaea, viral, human (compressed) December, 2016 5.4 GB .tar.gz .tar.gz
Refseq: bacteria, archaea, viral, human December, 2016 7.9 GB .tar.gz .tar.gz
Refseq: bacteria, archaea (compressed) April, 2018 6.2 GB .tar.gz .tar.gz
NCBI: nucleotide non-redundant sequences March, 2018 64 GB .tar.gz .tar.gz

Centrifuge is the work of Daehwan Kim, Li Song, Florian Breitwieser, Chanhee Park, Steven Salzberg among others. Please see the Centrifuge website for more information on the software, authors, and how to cite it.