HTTPS and S3 links to genomic index files freely available in the AWS cloud
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Centrifuge |
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Centrifuge is a very rapid and memory-efficient system for the classification of DNA sequences from microbial samples.
Collection | Date | Size | HTTPS URL | S3 URL |
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Refseq: bacteria, archaea, viral, human (compressed) | December, 2016 | 5.4 GB | .tar.gz | .tar.gz |
Refseq: bacteria, archaea, viral, human | December, 2016 | 7.9 GB | .tar.gz | .tar.gz |
Refseq: bacteria, archaea (compressed) | April, 2018 | 6.2 GB | .tar.gz | .tar.gz |
NCBI: nucleotide non-redundant sequences | March, 2018 | 64 GB | .tar.gz | .tar.gz |
Centrifuge is the work of Daehwan Kim, Li Song, Florian Breitwieser, Chanhee Park, Steven Salzberg among others. Please see the Centrifuge website for more information on the software, authors, and how to cite it.